Modulation of ABC...

Yu, Q., ..., Ni, D., Stahlberg, H., ...

(submitted), (2023)

Structure-function analysis of the cyclic ...

Sedzicki, J., Ni, D., Lehmann, F., Stahlberg, H., Dehio, C.

(submitted), (2023)

Distinct ultrastructural phenotypes of glial and neuronal ...

Böing, C., Di Fabrizio, M., Burger, D., Bol, J.G.J., Huisman, E., Rozemuller, A.J.M., van de Berg, W.D.J., Stahlberg, H., Lewis, A.

(submitted), (2023)

Structural basis of TRPM4 inhibition by ...

Ekundayo, B., Aruliampalam, P., Hämmerli, A.-F., Guichard, S., Boukenna, M., Rougier, J.-S., Abriel, H., Stahlberg, H., Ni, D.

(submitted), (2023)

Computational drug development for membrane protein targets

Li, H., Sun, X., Cui, W., Xu, M., Dong, J., Ekundayo, B., Ni, D., Rao, Z., Stahlberg, H., Yuan, S., Vogel, H.

Nature Biotechnology (in press), (2023)

Structural basis of bile salt extrusion and small-molecule inhibition in human BSEP

Liu, H., Irobalieva, R., Kowal, J., Ni, D., Nosol, K., Bang-Sorensen, R., Lancien, L., Stahlberg, H., Stieger, B., Locher, K.

Nature Communications 14(7296), 1-12 (2023)

Structure of a membrane-bound menaquinol:organohalide oxidoreductase

Cimmino, L., Duarte, A., Ni, D., Ekundayo, B., Pereira, I.A.C., Stahlberg, H., Holliger, C., Maillard, J.

Nature Communications 14(7038), (2023)

Genomic screening of 16 UK native bat species through conservationist networks uncovers coronaviruses with zoonotic potential

Tan, C.C.S., Trew, J., Peacock, T.P., Mok, K.Y., Hart, C., Lau, K., Ni, D., ..., Balloux, F., Savolainen, V.

Nature Communications 14(3322), (2023)

Structural basis of the allosteric inhibition of human ABCG2 by nanobodies

Irobalieva, R.N., Manolaridis, I., Jackson, S.M., Ni, D., Pardon, E., Stahlberg, H., Steyaert, J., Locher, K.P.

J. Mol. Biol. 435(19), 168234 (2023)

Fully co-factor-free ClearTau platform produces seeding-competent Tau fibrils for reconstructing pathological Tau aggregates

Limorenko, G., Tatli, M., Kolla, R., Nazarov, S., Weil, M.T., Schöndorf, D.C., Geist, D., Reinhardt, P., Ehrnhoefer, D.E., Stahlberg, H., Gasparini, L., Lashuel, H.A.

Nature Communications 14(3939), (2023)

Machine Learning in Protein Science De Novo Design of Site-Specific Protein Binders Using Surface Fingerprints

Van Hall-Beauvais, A., Gainza, P., Wehrle, S., Scheck, A., Marchand, A., Harteveld, Z., Goverde, C., Ni, D., Shuguang, T., Turelli, P., Trono, D., Stahlberg, H., Gao, G., Bronstein, M., Correia, B.

Protein Science 32(1), S106 (2023)

Activation mechanism of a short argonaute-TIR antiviral defense system

Ni, D., Lu, X., Stahlberg, H., Ekundayo, B.

Science Advances 9(29), eadh9002 (2023)

De novo design of protein interactions with learned surface fingerprints

Gainza, P., Wehrle, S., ..., Ni, D., ..., Fierz, B., Trono, D., Stahlberg, H., Bronstein, M., Correia, B.E.

Nature 617(5759), 176-184 (2023)

Cryo-EM structures and binding of mouse and human ACE2 to SARS-CoV-2 variants of concern indicate that mutations enabling immune escape could expand host range

Ni, D., Turelli, P., Beckert, B., Nazarov, S., Uchikawa, E., Myasnikov, A., Pojer, F., Trono, D., Stahlberg, H., Lau, K.

PLoS Pathogens 19(4), e1011206 (2023)

Structural insights into the regulation of Cas7-11 by TPR-CHAT

Ekundayo, B., Torre, D., Beckert, B., Nazarov, S., Myasnikov, A., Stahlberg, H., Ni, D.

Nature Struct. Mol. Biol. 30(2), 135-139 (2023)


Lossless cryo-grid preparation stage for high-resolution electron microscopy

Arnold, S., Braun, T., Stahlberg, H.

US Patent 11,442,074, (2022)

Allosteric control of type I-A CRISPR-Cas3 complexes and establishment as effective nucleic acid detection and human genome editing tools

Hu, C., Ni, D., Nam, K.H., Majumdar, S., McLean, J., Stahlberg, H., Terns, M.P., Ke, A.

Molecular Cell 82(15), 2754-2768 (2022)

Cryo-EM structure of alpha-synuclein fibrils amplified by PMCA from PD and MSA patient brains

Burger, D., Fenyi, A., Bousset, L., Stahlberg, H., Melki, R.

bioRxiv 2021.07.08.451588, (2022)

Mechanism of cyclic Beta-glucan export by ABC transporter Cgt of Brucella

Sedzicki, J., Ni, D., Lehmann, F., Wu, N., Zenobi, R., Jung, S., Stahlberg, H., Dehio, C.

Nature Struct. Mol. Biol. 29(12), 1170-1177 (2022)

2.4 Å structure of the double ring Gemmatimonas phototrophica photosystem

Qian, P., Gardiner, A.T., Simova, I., Naydenova, K., Croll, T.I., Jackson, P.J., Nupur, Kloz, M., ?ubáková, P., Kuzma, M., Zeng, Y., Castro-Hartmann. P., Knippenberg, B.v., Goldie, K., Kaftan, D., et al., Stahlberg, H., Sobotka, R., Russo, C.J., Polivka, T., Hunter, C.N., Koblizek, M.

Science Advances 8(7), eabk3139 (2022)

Trans-seeding of Alzheimer’s-related tau protein by a yeast prion

Flach, M., Leu, C., Martinisi, A., Skachokova, Z., Frank, S., Tolnay, M., Stahlberg, H., Winkler, D.

Alzheimer's Dementia 18(12), 2481-2492 (2022)

Patient-derived monoclonal antibody neutralizes SARS-CoV-2 Omicron variants and confers full protection in monkeys

Fenwick, C., Turelli, P., Ni, D., Perez, L., Lau, K., ..., Leyssen, P., Lévy, Y., Pojer, F., Stahlberg, H., LeGrand, R., Trono, D., Pantaleo, G.

Nature Microbiology 7(9), 1376-1389 (2022)

Structural analysis of the Spike of the Omicron SARS-COV-2 variant by cryo-EM and implications for immune evasion

Ni, D., Lau, K., Turelli, P., Raclot, C., Beckert, B., Nazarov, S., Pojer, F., Myasnikov, A., Stahlberg, H., Trono, D.

bioRxiv 2021.12.27.474250, (2022)

Cryo-EM structure of native human thyroglobulin

Adaixo, R., Steiner, E.M., Righetto, R., Schmidt, A., Stahlberg, H., Taylor, N.

Nature Comm. 13(1), 61 (2022)

Cryo-EM structures of a LptDE transporter in complex with Pro-macrobodies offer insight into lipopolysaccharide translocation

Botte, M., Ni, D., Schenck, S., Zimmermann, I., Chami, M., Bocquet, N., Egloff, P., Bucher, D., Trabuco, M., Cheng, R.K.Y., Brunner, J.D., Seeger, M.A., Stahlberg, H., Hennig, M.

Nature Communications 13(1), 1826 (2022)

Structural and molecular determinants for the interaction of ExbB from Serratia marcescens and HasB, a TonB paralog

Biou, V., Adaixo, R., Chami, M., Coureux. P., Laurent B., Ntsogo, Y., Cardoso de Amorim, G., Izadi-Pruneyre, N., Malosse, C., Chamot-Rooke, J., Stahlberg, H., Delepelaire, P.

Commun. Biol. 5(1), 355 (2022)


FTLD-TDP assemblies seed neoaggregates with subtype-specific features via a prion-like cascade

De Rossi, P., Lewis, A., Furrer, J., De Vos, L., Demeter, T., Zbinden, A., Zhong, W., Wiersma, V.I., Scialo, C., Weber, J., Guo, Z., Scaramuzza, S., Di Fabrizio, M., Böing, C., Castano-Diez, D., Al-Amoudi, A., Pérez-Berlanga, M., Lashley, T., Stahlberg, H., Polymenidou, M.

EMBO Rep. 22(12), e53877 (2021)

Structural strains of misfolded tau protein define different diseases

Stahlberg, H., Riek, R.

Nature 598(7880), 264-265 (2021)

Identification of a Dps contamination in Mitomycin-C-induced expression of Colicin Ia

Pipercevic, J., Jakob, R.P., Righetto, R., Goldie, K., Stahlberg, H., Maier, T., Hiller, S.

Biochim. Biophys. Acta Biomembr. 1863(7), 183607 (2021)

Structural basis of drug recognition by the multidrug transporter ABCG2

Kowal, J., Ni, D., Jackson, S.M., Manolaridis, I., Stahlberg, H., Locher, K.P.

J. Mol. Biol. 433(13), 166980 (2021)

Structures of ABCG2 under turnover conditions reveal a key step in drug transport mechanism

Yu, Q., Ni, D., Kowal, J., Manolaridis, I., Jackson, S.M., Stahlberg, H., Locher, K.P.

Nature Comm. 12(4376), (2021)

Structural basis of the activation of the CC chemokine receptor 5 by a chemokine agonist

Isaikina, P., Tsai, C.-J., Dietz, N.B., Pamula, F., Grahl, A., Goldie, K., Guixa-Gonzalez, R., Schertler, G.F.X., Hartley, O., Stahlberg, H., Maier, T., Deupi, X., Grzesiek, S.

Science Adv. 7:eabg8685, (2021)

Coordination-Driven Monolayer-to-Bilayer Transition in Two-Dimensional Metal-Organic Networks

Moradi, M., Opara, N., Housecroft, C., Tulli, L., Stahlberg, H., Jung, T., Shahgaldian, P.

J. Phys. Chem. 125(16), 4204-4211 (2021)

Single particle analysis for high resolution 2D electron crystallography

Righetto, R., Stahlberg, H.

Methods in Mol. Biology. 2215, 267-284 (2021)


Cryo-EM structural studies of the agonist complexed human TRPV4 ion-channel reveals novel structural rearrangements resulting in an open-conformation

Botte, M., Ulrich, A.K.C., Adaixo, R., Gnutt, D., Brockmann, A., Bucher, D., Chami, M., Bocquet, N., Ebbinghaus-Kintscher, U., Puetter, V., Becker, A., Egner, U., Stahlberg, H., Hennig, M., Holton, S.J.

bioRxiv , 2020.10.13.334797 (2020)

Structural investigation of ACE2 dependent disassembly of the trimeric SARS-CoV-2 Spike glycoprotein

Ni, D., Lau, K., Lehmann, F., Fränkl, A., Hacker, D., Pojer, F., Stahlberg, H.

bioRxiv 2020.10.12.336016, (2020)

Alterations in sub-axonal architecture between normal aging and Parkinson's diseased human brains using label-free cryogenic X-ray nanotomography

Tran, H.T., Tsai, E.H.R., Lewis, A., Moors, T., Bol, J.G.J.M., Rostami, I., Diaz, A., Joker, A.J., Guizar-Sicairos, M., Raabe, J., Stahlberg, H., van de Berg, W.D.J., Holler, M., Shahmoradian, S.

Frontiers in Neuroscience 14(570019), (2020)

Architecture of the centriole cartwheel-containing region revealed by cryo-electron tomography

Klena, N., Le Guennec, M., Tassin, A.M., Van den Hoek, H., Erdmann, P.S., Schaffer, M., Geimer, S., Aeschlimann. G., Kovacik, L., Goldie, K., Sadian, Y., Stahlberg, H., Engel, B.D., Hamel, V., Guichard, P.

EMBO J. e106246, 1-7 (2020)

Single particle cryo-EM of the complex between interphotoreceptor retinoid-binding protein and a monoclonal antibody

Sears, A.E., Albiez, S., Gulati, S., Wang, B., Kiser, P., Kovacik, L., Engel, A., Stahlberg, H., Palczewski, K.

FASEB J. 34(10), 13918-13934 (2020)

Structural basis of Focal Adhesion Kinase activation on lipid membranes

Acebrón, I., Righetto, R., Schoenherr, C., de Buhr, S., Redondo, P., Culley, J., Rodríguez, C.F., Daday, C., Biyani, N., Llorca, O., Byron, A., Chami, M., Gräter. F., Boskovic J., Frame, M.C., Stahlberg, H., Lietha, D.

EMBO J. 39(e104743), (2020)

Protease-activation using anti-idiotypic masks enables tumor specificity of a folate receptor 1-T cell bispecific antibody

M. Geiger, K.-G. Stubenrauch, J. Sam, W.F. Richter, G. Jordan, J. Eckmann, C. Hage, V. Nicolini, A. Freimoser-Grundschober, M. Ritter, M.E. Lauer, Stahlberg, H., Ringler, P., J. Patel, E. Sullivan, S. Grau-Richards, S. Endres, S. Kobold, P. Umaña, P. Brünker, C. Klein

Nature Commun. 11(1), 3196 (2020)

The Contorsbody, an antibody format for agonism: design, structure, and function

Georges, G.J., Dengl, S., Bujotzek, A., Hesse, F., Fischer, J.A.a., Gärtner, A., Benz, J., Lauer, M.E., Ringler, P., Stahlberg, H., Plath, F., Brinkmann, U., Imhof-Jung, S.

Comp. Struct. Biol. J. 18, 1210-1220 (2020)

High-resolution cryo-EM structure of urease from the pathogen Yersinia enterocolitica

Righetto, R., Anton, L., Rima, L., Jakob, R.P., Zivanov, J., Mahi, M.-A., Ringler, P., Schwede, T., Maier, T., Stahlberg, H.

Nature Commun. 11, 5101 (2020)

Cryo-EM, X-ray diffraction, and atomistic simulations reveal determinants for the formation of a supramolecular myelin-like proteolipid lattice

Ruskamo, S., Krokengen, O.C., Kowal, J., Nieminen, T., Lehtimäki, M., Raasakka, A., Dandey, V., Vattulainen, I., Stahlberg, H., Kursula, P.

J. Biol. Chemistry 295(26), 8692-8705 (2020)

New insights on the structure of alpha-synuclein fibrils using cryo-electron microscopy

Guerrero Ferreira, R., Kovacik, L., Ni, D., Stahlberg, H.

Current Opinion in Neurobiology 61, 89-95 (2020)

Grayscale e-beam lithography: Effects of a delayed development for well-controlled 3D patterning

Mortelmans, T., Kazasiz, D., Guzenko, V.A., Padeste, C., Braun, T., Stahlberg, H., Li, X., Ekinci, Y.

Microelectronic Engineering 225, 111272 (2020)

A helical inner scaffold provides a structural basis for centriole cohesion

Le Guennec, M., Klena, N., Gambarotto, D., Laporte, M.H., Tassin, A.M., van den Hoek, H., Erdmann, P.S., Schaffer, M., Kovacik, L., Borgers, S., Goldie, K., Stahlberg, H., Bornens, M., Azimzadeh, J., Engel, B.D., Hamel, V., Guichard, P.

Science Advances 6(7), eaaz4137 (2020)

Inner-membrane GspF of the bacterial type II secretion system is a dimeric adaptor mediating pseudopilus biogenesis

Van Putte, W., De Vos, T., Vanden Broeck, W., Stahlberg, H., Kudryashev, M., Savvides, S.N.

bioRxiv 435982, (2020)


DuoMab: a novel CrossMab-based IgG-derived antibody format for enhanced antibody-dependent cell-mediated cytotoxicity

Sustmann, C., Dickopf, S., Regula, J.T., Kettenberger, H., Mølhøj, M., Gassner, C., Weininger, D., Fenn, S., Manigold, T., Kling, L., Künkele, K.P., Schwaiger, M., Bossenmaier, B., Griese, J.J., Hopfner, K.P., Graff, A., Stahlberg, H., Ringler, P., Lauer, M.E., Brinkmann, U., Schaefer, W., Klein, C.

MAbs 11(8), 1402-1414 (2019)

Diverse roles of TssA-like proteins in the assembly of bacterial type VI secretion systems

Schneider, J.P., Nazarov, S., Liuzzo, M., Ringel, P.D., Stahlberg, H., Basler, M.

EMBO J. 38: e100825, 1-17 (2019)

Two new polymorphic structures of alpha-synuclein solved by cryo-electron microscopy

Guerrero Ferreira, R., Taylor, N., Arteni, A.-A., Kumari, P., Mona, D., Ringler, P., Britschgi, M., Lauer, M.E., Verasdock, J., Riek, R., Melki, R., Meier, B.H., Böckmann, A., Bousset, L., Stahlberg, H.

eLife 8:e48907, (2019)

Cryo-EM structure of the rhodopsin-G-alpha-i-beta-gamma complex reveals binding of the rhodopsin C-terminal tail to the G-beta subunit

Tsai, C.J., Marino, J., Adaixo, R., Pamula, F., Muehle, J., Maeda, S., Flock, T., Taylor, N., Mohammed, I., Matile, H., Dawson, R.J.P., Deupi, X., Stahlberg, H., Schertler, G.F.X.

eLife 8;e46041, (2019)

Lewy pathology in Parkinson's disease consists of crowded organelles and lipid membranes

Shahmoradian, S., Lewis, A., Genoud, C., Graff, A., Pérez Navarro, P., Goldie, K., Sütterlin, R., Castano-Diez, D., Ingrassia, A., Rozemuller, A.J.M., Paepe, A.D., Erny, J.Staempfli, A., Hoernschemeyer, J., Niedieker, D., El-Mashtoly, S.F., Gerwert, K., Bohrmann, B., Britschgi, M., Stahlberg, H., van de Berg, W.D.J., Lauer, M.E.

Nature Neuroscience 22, 1099-1109 (2019)

‘Differential visual proteomics’: Enabling the proteome-wide comparison of protein structures of single-cells

Syntychaki, A., Rima, L., Schmidli, C., Stohler, T., Bieri, A., Sütterlin, R., Stahlberg, H., Castano-Diez, D., Braun, T.

J. of Proteome Research 18(9), 3521-3531 (2019)

Imaging of post-mortem human brain tissue using electron and X-ray microscopy

Lewis, A., Genoud, C., Pont, M., van de Berg, W.D.J., Frank, S., Stahlberg, H., Shahmoradian, S., Al-Amoudi, A.

Current Opinion Structural Biology 58, 138-148 (2019)

Tumor-targeted 4-1BB agonists for combination with T cell bispecific antibodies as off-the-shelf therapy

Claus, C., Ferrara, C., Xu, W., Sam, J., Lang, S., Uhlenbrock, F., Albrecht, R., Herter, S., Schlenker, R., Hüsser, T., Diggelmann, S., Challier, J., Mössner, E., Hosse, RJ., Hofer, T., Brünker, P., Joseph, C., Benz, J., Ringler, P., Stahlberg, H., Lauer, M., et al., Klein, C., Umana, P.

Science Translational Medicine 11(496), 1-12 (2019)

Microfluidic protein isolation and sample preparation for high resolution cryo-EM

Schmidli, C., Albiez, S., Rima, L., Righetto, R., Mohammed, I., Oliva, P., Kovacik, L., Stahlberg, H., Braun, T.

PNAS 116(30), 15007-15012 (2019)

Cryo-EM structures of the pore-forming A subunit from the Yersinia entomophaga ABC toxin

Piper, S., Brillault, L., Rothnagel, R., Croll, T., Box, J., Chassagnon, I., Scherer, S., Goldie, K., Jones, S., Schepers, F., Hartley-Tassell, L., Ve, T., Busby, J., Dalziel, J., Lott, S., Hankamer, B., Stahlberg, H., Hurst, M., Landsberg, M

Nature Communications 10(1), 1952 (2019)

Array based real-time measurement of fluid viscosities and mass-densities to monitor biological filament formation

Oliva, P., Bircher, B., Schönenberger, C.-A., Braun, T.

Lab on a Chip 19(7), 1305-1314 (2019)

Deuterium induces a distinctive Escherichia coli proteome that correlates with the reduction in growth rate.

Opitz, C., Ahrne, E., Goldie, K., Schmidt, A., Grzesiek, S

J. Biol. Chem. 294(7), 2279-2292 (2019)

Cryo-EM structure of phosphodiesterase 6 reveals insights into the allosteric regulation of type I phosphodiesterases

Gulati, S., Palczewski, K., Engel, A., Stahlberg, H., Kovacik, L.

Science Advances 5(2), eaav4322 (2019)

Retrieving high-resolution information from disordered 2D crystals by single particle cryo-EM

Righetto, R., Biyani, N., Kowal, J., Chami, M., Stahlberg, H.

Nature Communications 10(1), 1722 (2019)

Molecular structure and function of myelin protein P0 in membrane stacking

Raasakka, A., Ruskamo, S., Kowal, J., Han, H., Baumann, A., Myllykoski, M., Fasano, A., Rossano, R., Riccio, P., Buerck, J., Ulrich, A.S., Stahlberg, H., Kursula, P.

Scientific Reports 9(462), (2019)

TDP-43 extracted from FTLD patient brains displays distinct aggregate assemblies and neurotoxic effects reflecting disease progression rates

Laferriere, F., Maniecka, Perez-Berlanga, Hruska-Plochan, Gilhespy, Hock, Wagner, Afroz, Boersema, Barmettler, Foti, Asi, Isaacs, Al-Amoudi, A., Lewis, A., Stahlberg, H., Ravits, De Giorgi, Ichas, Bezard, Picotti, P., Lashley, T., Polymenidou, M.

Nature Neuroscience 22, 65-77 (2019)


Part 2: Coping with Biology

Benjamin Stecher. (Images:, Lewis, A., Shahmoradian, S., Stahlberg, H., )

Tomorrow Edition (an online blog by Benjamin Stecher about his journey in Parkinson's disease), (2018)

Rapid Structure Determination of Microcrystalline Molecular Compounds Using Electron Diffraction.

Gruene, T., Wennmacher, JTC, Zaubitzer, C, Holstein, JJ, Heidler, J, Fecteau-LeFebvre, A., De Carlo, S, Mueller, E, Goldie, K., Regeni, I, Li, T, Santiso-Quinones, G, Steinfeld, G, Handschin, S, , ., van Bokhoven, JA, Clever, GH, Pantelic, R.

Angew. Chem. Int. Ed. Engl. 57(50), 16313-16317 (2018)

Self-assembly of a designed nucleoprotein architecture through multimodal interactions

Subramanian, R.H., Smith, S.J., Alberstein, R.G., Bailey, J.B., Zhang, L., Cardone, G., Suominen, L., Chami, M., Stahlberg, H., Baker, T.S., Tezcan, F.A.

ACS Central Science 4(11), 1578-1586 (2018)

Cerebral Corpora amylacea are dense membranous labyrinths containing structurally preserved cell organelles

Pérez Navarro, P., Genoud, C., Castano-Diez, D., Graff-Meyer, A., Lewis, A., de Gier, Y., Lauer, M.E., Britschgi, M., Bohrmann, B., Frank, S., Hench, J., Schweighauser, G., Rozemuller, A.J.M., van de Berg, W.D.J., Stahlberg, H., Shahmoradian, S.

Scientific Reports 8(18046), (2018)

Cryo-EM structures of a human ABCG2 mutant trapped in ATP-bound and substrate-bound states

Manolaridis, I., Jackson, S.M., Taylor, N., Kowal, J., Stahlberg, H., Locher, K.

Nature 563(7731), 426-430 (2018)

Phospholipid-block copolymer hybrid vesicles with lysosomal escape ability

Zong, W., Thingholm, B., Itel, F., Schattling, P.S., Brodszkij, E., Mayer, D., Stenger, S., Goldie, K., Han, X., Städler, B.

Langmuir 34(23), 6874-6886 (2018)

Protocols for Subtomogram Averaging of Membrane Proteins in the Dynamo Software Package

Pérez Navarro, P., Stahlberg, H., Castano-Diez, D.

Frontiers in Molecular Biosciences 5(82), 1-18 (2018)

Demonstration of femtosecond X-ray pump X-ray probe diffraction on protein crystals

Opara, N., Mohacsi, I., Makita, M., Castano-Diez, D., Diaz, A., Jurani, P., Marsh, M., Meents, A., Milne, C.J., Mozzanica, A., Padeste, C., Panneels, V., Sikorski, M., Song, S., Stahlberg, H., Vartiainen, I., Vera, L., Wang, M., Willmott, P.R., David, C.

Structural Dynamics 5(5), 054303 (2018)

An iris diaphragm mechanism to gate a cyclic nucleotide-gated ion channel

Marchesi, A., Gao, X., Adaixo, R., Rheinberger, J., Stahlberg, H., Nimigean, C., Scheuring, S.

Nature Comm. 9(1), 3978 (2018)

Structure of a PSI–LHCI–cyt b6f supercomplex in Chlamydomonas reinhardtii promoting cyclic electron flow under anaerobic conditions

Steinbeck J., Ross, I.L., Rothnagel, R., Gäbelein, P., Schulze, S., Giles, N., Ali, R., Drysdale, R., Sierecki, E., Gambia, Y., Stahlberg, H., Takahashi, Y., Hippler, M., Hankamer, B.

PNAS 115(41), 10517-10522 (2018)

Cryo-EM structure of alpha-synuclein fibrils

Guerrero Ferreira, R., Taylor, N., Mona, D., Ringler, P., Lauer, M.E., Riek, R., Britschgi, M., Stahlberg, H.

eLife 7(e36402), (2018)

Gold nanoparticles produced by laser ablation in water and in graphene oxide suspension

Torrisi, L., Cutroneo, M., Silipigni, L., Barreca, F., Fazio, B., Restuccia, N., Kovacik, L.

Philosphophical Magazine 98(24), 2205-2220 (2018)

Structural basis for regulation of human acetyl-CoA carboxylase

Hunkeler, M., Hagmann, A., Stuttfeld, E., Chami, M., Guri, Y., Stahlberg, H., Maier, T.

Nature 558, 470-474 (2018)

Structural basis of small-molecule inhibition of human multidrug transporter ABCG2

Jackson, S.M., Manolaridis, I., Kowal, J., Zechner, M., Taylor, N., Bause, M., Bauer, S., Bartholomaeus, R., Bernhardt, G., Koenig, B., Buschauer, A., Stahlberg, H., Altmann, K.H., Locher, K.P.

Nature Struct. Mol. Biol. 25(4), 333-340 (2018)

Image processing techniques for high-resolution structure determination from badly ordered 2D crystals

Biyani, N., Scherer, S., Righetto, R., Kowal, J., Chami, M., Stahlberg, H.

Journal of Structural Biology 203(2), 120-134 (2018)

Femtosecond X-ray coherent diffraction of aligned amyloid fibrils on low background graphene

Seuring, C., Ayyer, Filippaki, Barthelmess, Longchamp, Ringler, P., Pardini, Wojtas, Coleman, Dörner, Fuglerud, Hammarin, Habenstrein, Langkilde, Loquet, Meents, Riek, Stahlberg, H., Boutet, Hunter, Koglin, Liang, Ginn, Millane, Frank, Barty, Chapman

Nature Communications 9(1), 1836 (2018)

Miniaturized sample preparation for transmission electron microscopy

Schmidli, C., Rima, L., Arnold, S., Stohler, T., Syntychaki, A., Bieri, A., Albiez, S., Goldie, K., Chami, M., Stahlberg, H., Braun, T.

Journal of Visual Experiments (JOVE) (137), (2018)

3D correlative electron microscopy reveals continuity of Brucella-containing vacuoles with the endoplasmic reticulum

Sedzicki, J., Tschon, T., Huey-Low, S., Willemart, K., Goldie, K., Lewtesson, J.-J., Stahlberg, H., Dehio, C.

J. of Cell Science 131(4), (2018)

Cryo-EM reconstruction of Type VI secretion system baseplate and sheath distal end

Nazarov, S., Schneider, J.PO., Brackmann, M., Goldie, K., Stahlberg, H., Basler, M.

EMBO Journal 37, e97103 (2018)

Miniaturizing EM Sample Preparation: Opportunities, Challenges and "Visual Proteomics"

Arnold, S., Müller, S., Schmidli, C., Syntychaki, A., Rima, L., Chami, M., Stahlberg, H., Goldie, K., Braun, T.

Proteomics 18(5-6), e1700176 (2018)

Structure of a zosuquidar and UIC2-bound human-mouse chimeric ABCB1

Alam, A., Küng, R., Kowal, J., McLeod, R., Tremp, N., Broude, E.V., Roninson, I.B., Stahlberg, H., Locher, K.P.

PNAS 115(9), E1973-E1982 (2018)

MRCZ – A file format for cryo-TEM data with fast compression

McLeod, R., Righetto, R., Stewart, A., Stahlberg, H.

J. Struct. Biol. 201(3), 252-257 (2018)

High-resolution cryo-EM structure of the cyclic nucleotide-modulated potassium channel MloK1 in a lipid bilayer

Kowal, J., Biyani, N., Chami, M., Scherer, S., Rzepiela, A., Baumgartner, P., Upadhyay, V., Nimigean, C.N., Stahlberg, H.

Structure 26(1), 20-27 (2018)


Lipid Internal Dynamics Probed in Nanodiscs

Martinez, D., Decossas, M., Kowal, J., Frey, L., Stahlberg, H., Dufourc, E.-J.., Riek, R., Habenstein, B., Bibow, S., Loquet A.

ChemPhysChem 18(19), 2651-2657 (2017)

Expression, Biochemistry, and Stabilization with Camel Antibodies of Membrane Proteins: Case Study of the Mouse 5-HT3 Receptor

Hassaïne, G., Deluz, C., Grasso, L., Wyss, R., Hovius, R., Stahlberg, H., Tomizaki, T., Desmyter, A., Moreau, C., Peclinovska, L., Minniberger, S., Mebarki, L., Li, X.-D.., Vogel, H., Nury, H.

Methods Mol. Biol. 1635(Chapter 8), 139-168 (2017)

CryoEM structure of the extended type VI secretion system sheath–tube complex

Wang, J., Brackmann, M., Castano-Diez, D., Kudryashev, M., Goldie, K., Maier, T., Stahlberg, H., Basler, M.

Nature Microbiology 2(11), 1507-1512 (2017)

Three-Dimensional Imaging of Biological Tissue by Cryo X-Ray Ptychography

Shahmoradian, S., Tsai, E.H.R., Diaz, A., Guizar-Sicairos, M., Spycher, L., Raabe, J., Britschgi, M., Ruf, A., Stahlberg, H., Holler, M.

Scientific Reports 7(2), 6291 (2017)

Structure of the human multidrug transporter ABCG2

Taylor, N., Manolaridis, I., Jackson, S.M., Kowal, J., Stahlberg, H., Locher, K.P.

Nature 546, 504-509 (2017)

Membrane vesicle secretion and prophage induction in multidrug-resistant Stenotrophomonas maltophilia in response to ciprofloxacin stress

Devos, S., Van Putte, W., Vitse, J., Van Driessche, G., Stremersch, S., Van Den Broek, W., Raemdonck, K., Braeckmans, K., Stahlberg, H., Kudryashev, M., Savvides, S., Devreese, B.

Environmental Microbiology 19(10), 3930-3937 (2017)

Direct protein crystallization on ultrathin membranes for diffraction measurements at X-ray free electron lasers

Opara, N., Martiel, I., Arnold, S., Braun, T., Stahlberg, H., Makita, M., David, C., Padeste, C.

J. of Applied Crystallography 50, 909-918 (2017)

Cryo-EM analysis of homodimeric full-length LRRK2 and LRRK1 protein complexes

Sejwal, K., Chami, M., Remigy, H., Vancraenenbroeck, R., Sibran, W., Sütterlin, R., Baumgartner, P., McLeod, R., Chartier-Harlin. M.-C., Baekelandt, V., Stahlberg, H., Taymans, J.-M.

Scientific Reports 7(1), 8667-8678 (2017)

Atomic structure of granulin determined from native nanocrystalline granulovirus using an X-ray free-electron laser

Gati, C., Oberthuer, D., Yefanov, O., Bunker, R.D., Stellato, F., Chiu, E., Yeh, S.M., Aquila, A., Basu, S., Bean, R., Beyerlein, K.R., Botha, S., Boutet, S., DePonte, D.P., Doak, R.B., Fromme, R., ..., Goldie, K., ..., Barty, A., Chapman, H.N.

Proc Natl Acad Sci U S A 114(9), 2247-2252 (2017)

Membrane association landscape of myelin basic protein portrays formation of the myelin major dense line

Raasakka, A., Ruskamo, S., Kowal, J., Barker, R., Baumann, A., Martel, A., Tuusa, J., Myllykoski, M., Bürck, J., Ulrich, A.S., Stahlberg, H., Kursula, P.

Scientific Reports 7(1), 4974-4991 (2017)

Focus: The interface between data collection and data processing in cryo-EM

Biyani, N., Righetto, R., McLeod, R., Caujolle-Bert, D., Castano-Diez, D., Goldie, K., Stahlberg, H.

J. Struct. Biol. 198(2), 124-133 (2017)

Cell-free reconstitution reveals centriole cartwheel assembly mechanisms

Guichard, P., Hamel, V., Le Quennec, M., Banterle, N., Iacovache, I., Nemcikova, V., Flückiger, I., Goldie, K., Stahlberg, H., Levy, D., Zuber, B., Gönczy, P.

Nature Communications 8:14813, (2017)

Structure of the Full-length VEGFR-1 Extracellular Domain in Complex with VEGF-A

Markovic-Mueller, S, Stuttfeld, E., Asthana, M., Weiner, T., Bliven, S., Goldie, K., Kisko, K., Capitani, G., Ballmer-Hofer, K.

Structure 25(2), 341-352 (2017)

Amyloid Fibril Polymorphism: Almost Identical on the Atomic Level, Mesoscopically Very Different

Seuring, C., Verasdonck, J., Ringler, P., Cadalbert, R., Stahlberg, H., Böckmann,A., Meier, B.H., Riek, R.

J. Phys. Chem. 121(8), 1783-1792 (2017)

Blotting-free and lossless cryo-electron microscopy grid preparation from nanoliter-sized protein samples and single-cell extracts

Arnold, S., Albiez, S., Bieri, A., Syntychaki, A., Adaixo, R., McLeod, R., Goldie, K., Stahlberg, H., Braun, T.

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Proteoliposomes - a system to study membrane proteins under buffer gradients by cryo-EM

Sejwal, K., Chami, M., Baumgartner, P., Kowal, J., Müller, S., Stahlberg, H.

Nanotechnology Reviews 6(1), 57-74 (2017)

Solution structure of discoidal high-density lipoprotein particles with a shortened apolipoprotein A-I

Bibow,S., Polyhach, Y., Eichmann, C., Chi, C.N., Kowal, J., Albiez, S., McLeod, R., Stahlberg, H., Jeschke, G., Günter, P., Riek, R.

Nature Structural and Molecular Biology 24, 187-193 (2017)

Two-dimensional crystallization of the mouse serotonin 5-HT3A receptor

Rheinberger, J., Hassaine, G., Chami, M., Stahlberg, H., Vogel, H., Li, X.

Micron 90, 19-24 (2017)

Robust image alignment for cryogenic transmission electron microscopy

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J. Struct. Biol. 197(3), 279-293 (2017)

Thylakoid ultrastructure: Visualizing the photosynthetic machinery

Steinbeck, S., O’Mara, M.L., Ross, I., Stahlberg, H., Hankamer, B.

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Dynamo Catalogue: Geometrical tools and data management for particle picking in subtomogram averaging of cryo-electron tomograms

Castano-Diez, D., Kudryashev, M., Stahlberg, H.

J. Struct. Biol. 197(2), 135-144 (2017)


Biochemical and biophysical approaches to study the structure and function of the chloride channel (ClC) family of proteins

Abeyrathne, P., Chami, M., Stahlberg, H.

Biochimie 128-129, 154-162 (2016)

GSDMD membrane pore formation constitutes the mechanism of pyroptotic cell death

Sborgi, L., Rühl, S., Mulvihill, E., Pipercevic, J., Heilig, R., Stahlberg, H., Farad, C.J., Müller, D.J., Broz, P., Hiller, S.

EMBO Journal 35(16), 1766-1778 (2016)

Real-time visualization of conformational changes within single MloK1 cyclic nucleotide-modulated channels

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Nature Communications 7, 12789 (2016)

Patent: Cryo-electron microscopy from nanoliter sample volumes

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Total sample conditioning and preparation of nanoliter volumes for electron microscopy

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ACS Nano 10, 4981-4988 (2016)

Characterization of mAb dimers reveals predominant dimer forms common in therapeutic mAbs

Plath, F., Ringler, P., Graff, A., Stahlberg, H., Lauer, M., Rufer, A., Graewert, M., Svergun, D., Kellermann, G., Winkler, C., Stücke, J.O., Koulov, A., Schnaible, V.

mAbs 8(5), 928-940 (2016)

Cullin-RING ubiquitin E3 ligase regulation by the COP9 signalosome

Cavadini, S., Fischer, E.S., Goldie, K., Boehm, K., Lingaraju, G.M., Jones, M., Bunker, R.D., Richkule, R., Pantelic, R., Mohamed, W.I., Hassiepen, U., Beckwith, R.E.J., Stahlberg, H., and Thomae, N.H.

Nature 531(7596), 598-603 (2016)

Atomic structure of bacteriophage T4 baseplate and its function in triggering sheath contraction

Taylor, N., Prokhorov, N.S., Guerrero Ferreira, R., Shneider, M.M., Browning, C., Goldie, K., Stahlberg, H., Leiman, P.G.

Nature 533(7603), 346-352 (2016)

Cholesteryl ester transfer between lipoproteins does not require the formation of a ternary tunnel complex with the cholesteryl ester transfer protein

Lauer, M.E., Graff, A., Rufer, A.C., Maugeais, C., von der Mark, E., Matile, H., D'Arcy, B., Magg, C., Ringler, P., Müller, S., Scherer, S., Dernick, G., Thoma, R., Hennig, M., Niesor, E.J., Stahlberg, H.

J. Struct. Biol. 194(2), 191-198 (2016)

Preparation and characterization of stable alpha-synuclein lipoprotein particles

Eichmann, C., Campioni, S., Kowal, J., Maslennikov, I., Gerez, J., Liu, X., Verasdonck, J., Nespovitaya, N., Choe, S., Meier, B., Picotti, P., Rizo, J., Stahlberg, H., Riek, R.

J. Biol. Chem. 291(16), 8516-8527 (2016)

The structure of the mouse serotonin 5-HT3 receptor in lipid vesicles

Kudryashev, M., Castano-Diez, D., Deluz, C., Hassaine, G., Grasso, L., Graff, A., Vogel, H., Stahlberg, H.

Structure 24(1), 165-170 (2016)

The lipidome associated with the gamma-secretase complex is required for its integrity and activity.

Ayciriex, S., Gerber, H., Osuna, G.M., Chami, M., Stahlberg, H., Shevchenko, A., Fraering, P.C.

Biochemical Journal 473(3), 321-334 (2016)

Glasslike Membrane Protein Diffusion in a Crowded Membrane.

Munguira I., Casuso I., Takahashi H., Rico F., Miyagi A., Chami, M., Scheuring S.

ACS Nano 10(2), 2584-90 (2016)

Automated high-throughput viscosity and density sensor using nanomechanical resonators

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Sensor Actuat B-chem 223(C), 784–90 (2016)

Very high-density lipoprotein and vitellin as carriers of novel biliverdins IXalpha with a farnesyl side-chain presumably derived from heme A in Spodoptera littoralis

Kayser, H., Nimtz, M., Ringler, P., Müller, S.

Insect Biochem Mol Biol 68, 41-51 (2016)


3D reconstruction of two-dimensional crystals

Stahlberg, H., Biyani, N., Engel, A.

Arch Biochem Biophys 581, 68-77 (2015)

Structure and assembly of the mouse ASC inflammasome by combined NMR spectroscopy and cryo-electron microscopy

Sborgi, L., Ravotti, F., Dandey, V. P., Dick, M. S., Mazur, A., Reckel, S., Chami, M., Scherer, S., Huber, M., Bockmann, A., Egelman, E. H., Stahlberg, H., Broz, P., Meier, B. H., Hiller, S.

Proc Natl Acad Sci U S A 112(43), 13237-42 (2015)

Structure of the type VI secretion system contractile sheath

Kudryashev, M., Wang, R. Y., Brackmann, M., Scherer, S., Maier, T., Baker, D., DiMaio, F., Stahlberg, H., Egelman, E. H., Basler, M.

Cell 160(5), 952-62 (2015)

CTF challenge: result summary

Marabini, R., Carragher, B., Chen, S., Chen, J., Cheng, A., Downing, K. H., Frank, J., Grassucci, R. A., Bernard Heymann, J., Jiang, W., Jonic, S., Liao, H. Y., Ludtke, S. J., Patwari, S., Piotrowski, A. L., Quintana, A., Sorzano, C. O., Stahlberg, H., Vargas, J., Voss, N. R., Chiu, W.

J Struct Biol 190(3), 348-59 (2015)

Translational arrest by a prokaryotic signal recognition particle is mediated by RNA interactions

Beckert, B., Kedrov, A., Sohmen, D., Kempf, G., Wild, K., Sinning, I., Stahlberg, H., Wilson, D. N., Beckmann, R.

Nat Struct Mol Biol 22(10), 767-73 (2015)

Yersinia enterocolitica type III secretion injectisomes form regularly spaced clusters, which incorporate new machines upon activation

Kudryashev, M., Diepold, A., Amstutz, M., Armitage, J. P., Stahlberg, H., Cornelis, G. R.

Mol Microbiol 95(5), 875-84 (2015)


Rendering graphene supports hydrophilic with non-covalent aromatic functionalization for transmission electron microscopy

Pantelic, R., Fu, W., Schönenberger, C., Stahlberg, H.

Appl Phys Lett 104(13), 134103-134107 (2014)

2dx_automator: implementation of a semiautomatic high-throughput high-resolution cryo-electron crystallography pipeline

Scherer, S., Kowal, J., Chami, M., Dandey, V., Arheit, M., Ringler, P., Stahlberg, H.

J Struct Biol 186(2), 302-7 (2014)

openBEB: open biological experiment browser for correlative measurements

Ramakrishnan, C., Bieri, A., Sauter, N., Roizard, S., Ringler, P., Müller, S., Goldie, K., Enimanev, K., Stahlberg, H., Rinn, B., Braun, T.

BMC Bioinformatics 15, 84 (2014)

A KcsA/MloK1 chimeric ion channel has lipid-dependent ligand-binding energetics

McCoy, J. G., Rusinova, R., Kim, D. M., Kowal, J., Banerjee, S., Jaramillo Cartagena, A., Thompson, A. N., Kolmakova-Partensky, L., Stahlberg, H., Andersen, O. S., Nimigean, C. M.

J Biol Chem 289(14), 9535-46 (2014)

Single particle 3D reconstruction for 2D crystal images of membrane proteins

Scherer, S., Arheit, M., Kowal, J., Zeng, X., Stahlberg, H.

J Struct Biol 185(3), 267-77 (2014)

Structural and mechanistic paradigm of leptin receptor activation revealed by complexes with wild-type and antagonist leptins

Moharana, K., Zabeau, L., Peelman, F., Ringler, P., Stahlberg, H., Tavernier, J., Savvides, S. N.

Structure 22(6), 866-77 (2014)

Clostridium difficult toxin CDT hijacks microtubule organization and reroutes vesicle traffic to increase pathogen adherence

Schwan, C., Kruppke, A. S., Nolke, T., Schumacher, L., Koch-Nolte, F., Kudryashev, M., Stahlberg, H., Aktories, K.

Proc Natl Acad Sci U S A 111(6), 2313-8 (2014)

Review: Cryo-electron microscopy of membrane proteins

Goldie, K., Abeyrathne, P., Kebbel, F., Chami, M., Ringler, P., Stahlberg, H.

In: Kuo J. (eds) Electron Microscopy. Methods in Molecular Biology (Methods and Protocols) Vol. 1117(Humana Press, Totowa, NJ, USA), 325-341 (2014)

Disease modeling and phenotypic drug screening for diabetic cardiomyopathy using human induced pluripotent stem cells

Drawnel, F. M., Boccardo, S., Prummer, M., Delobel, F., Graff, A., Weber, M., Gerard, R., Badi, L., Kam-Thong, T., Bu, L., Jiang, X., Hoflack, J. C., Kiialainen, A., Jeworutzki, E., Aoyama, N., Carlson, C., Burcin, M., Gromo, G., Boehringer, M., Stahlberg, H., Hall, B. J., Magnone, M. C., Kolaj

Cell Rep 9(3), 810-21 (2014)

The ultrastructure of Chlorobaculum tedium revealed by cryo-electron tomography

Kudryashev, M., Aktoudianaki, A., Dedoglou, D., Stahlberg, H., Tsiotis, G.

Biochim Biophys Acta 1837(10), 1635-42 (2014)

Exploring the interactome: microfluidic isolation of proteins and interacting partners for quantitative analysis by electron microscopy

Giss, D., Kemmerling, S., Dandey, V., Stahlberg, H., Braun, T.

Anal Chem 86(10), 4680-7 (2014)

Functional surface engineering by nucleotide-modulated potassium channel insertion into polymer membranes attached to solid supports

Kowal, J.L., Kowal, J., Wu, D., Stahlberg, H., Palivan, C. G., Meier, W. P.

Biomaterials 35(26), 7286-94 (2014)

X-ray structure of the mouse serotonin 5-HT3 receptor

Hassaine, G., Deluz, C., Grasso, L., Wyss, R., Tol, M. B., Hovius, R., Graff, A., Stahlberg, H., Tomizaki, T., Desmyter, A., Moreau, C., Li, X. D., Poitevin, F., Vogel, H., Nury, H.

Nature 512(7514), 276-81 (2014)

Ligand-induced structural changes in the cyclic nucleotide-modulated potassium channel MloK1

Kowal, J., Chami, M., Baumgartner, P., Arheit, M., Chiu, P. L., Rangl, M., Scheuring, S., Schroder, G. F., Nimigean, C. M., Stahlberg, H.

Nat Commun 5, 3106 (2014)


Microfluidics to isolate untagged proteins from cell extracts for visual analysis by electron microscopy

D. Giss, S. Kemmerling, Dandey, V., Stahlberg, H., Braun, T.

17th International Conference on Miniaturized Systems for Chemistry and Life Science Conference proceeding, (2013)

Single-cell lysis for visual analysis by electron microscopy

Kemmerling, S., Arnold, S., Bircher, B. A., Sauter, N., Escobedo, C., Dernick, G., Hierlemann, A., Stahlberg, H., Braun, T.

J Struct Biol 183(3), 467-73 (2013)

Automation of image processing in electron crystallography

Arheit, M., Castano-Diez, D., Thierry, R., Gipson, B., Zeng, X., Stahlberg, H.

Methods Mol Biol 955, 313-30 (2013)

Structure and substrate-induced conformational changes of the secondary citrate/sodium symporter CitS revealed by electron crystallography

Kebbel, F., Kurz, M., Arheit, M., Grütter, M. G., Stahlberg, H.

Structure 21(7), 1243-50 (2013)

Structure of the dodecameric Yersinia enterocolitica secretin YscC and its trypsin-resistant core

Kowal, J., Chami, M., Ringler, P., Müller, S., Kudryashev, M., Castano-Diez, D., Amstutz, M., Cornelis, G. R., Stahlberg, H., Engel, A.

Structure 21(12), 2152-61 (2013)

Cryo-electron tomography reveals four-membrane architecture of the Plasmodium apicoplast

Lemgruber, L., Kudryashev, M., Dekiwadia, C., Riglar, D. T., Baum, J., Stahlberg, H., Ralph, S. A., Frischknecht, F.

Malar J 12, 25 (2013)

Thermal unfolding of a mammalian pentameric ligand-gated ion channel proceeds at consecutive, distinct steps

Tol, M. B., Deluz, C., Hassaine, G., Graff, A., Stahlberg, H., Vogel, H.

J Biol Chem 288(8), 5756-69 (2013)

Image processing of 2D crystal images

Arheit, M., Castano-Diez, D., Thierry, R., Gipson, B., Zeng, X., Stahlberg, H.

Methods Mol Biol 955, 171-94 (2013)

Vaccinia virus entry is followed by core activation and proteasome-mediated release of the immunomodulatory effector VH1 from lateral bodies

Schmidt, F. I., Bleck, C. K., Reh, L., Novy, K., Wollscheid, B., Helenius, A., Stahlberg, H., Mercer, J.

Cell Rep 4(3), 464-76 (2013)

In situ structural analysis of the Yersinia enterocolitica injectisome

Kudryashev, M., Stenta, M., Schmelz, S., Amstutz, M., Wiesand, U., Castano-Diez, D., Degiacomi, M. T., Munnich, S., Bleck, C. K., Kowal, J., Diepold, A., Heinz, D. W., Dal Peraro, M., Cornelis, G. R., Stahlberg, H.

Elife 2, e00792 (2013)

Merging of image data in electron crystallography

Arheit, M., Castano-Diez, D., Thierry, R., Abeyrathne, P., Gipson, B., Stahlberg, H.

Methods Mol Biol 955, 195-209 (2013)

Molecular assembly of the aerolysin pore reveals a swirling membrane-insertion mechanism

Degiacomi, M. T., Iacovache, I., Pernot, L., Chami, M., Kudryashev, M., Stahlberg, H., van der Goot, F. G., Dal Peraro, M.

Nat Chem Biol 9(10), 623-9 (2013)


The application of graphene as a sample support in transmission electron microscopy

Pantelic, R., Meyer, J.C., Kaiser, U., Stahlberg, H.

Solid State Commun 152(15), 1375-1382 (2012)

Electron microscopy analysis of 2D crystals of membrane proteins

Abeyrathne, P., Arheit, M., Kebbel, F., Castano-Diez, D., Goldie, K., Chami, M., Relault, L., Kühlbrandt, W., Stahlberg, H.

Comprehensive Biophysics 1, 277-310 (2012)

Projection structure of the secondary citrate/sodium symporter CitS at 6 Å resolution by electron crystallography

Kebbel, F., Kurz, M., Grütter, M. G., Stahlberg, H.

J Mol Biol 418(42006), 117-26 (2012)

RNAi screening reveals proteasome- and Cullin3-dependent stages in vaccinia virus infection

Mercer, J., Snijder, B., Sacher, R., Burkard, C., Bleck, C. K., Stahlberg, H., Pelkmans, L., Helenius, A.

Cell Rep 2(4), 1036-47 (2012)

Assessing the benefits of focal pair cryo-electron tomography

Kudryashev, M., Stahlberg, H., Castano-Diez, D.

J Struct Biol 178(2), 88-97 (2012)

Structural basis for chirality and directional motility of Plasmodium sporozoites

Kudryashev, M., Munter, S., Lemgruber, L., Montagna, G., Stahlberg, H., Matuschewski, K., Meissner, M., Cyrklaff, M., Frischknecht, F.

Cell Microbiol 14(11), 1757-68 (2012)

Structure and function of purified monoclonal antibody dimers induced by different stress conditions

Paul, R., Graff, A., Stahlberg, H., Lauer, M. E., Rufer, A. C., Beck, H., Briguet, A., Schnaible, V., Buckel, T., Boeckle, S.

Pharm Res 29(8), 2047-59 (2012)

Characterization of the motion of membrane proteins using high-speed atomic force microscopy

Casuso, I., Khao, J., Chami, M., Paul-Gilloteaux, P., Husain, M., Duneau, J. P., Stahlberg, H., Sturgis, J. N., Scheuring, S.

Nat Nanotechnol 7(8), 525-9 (2012)

Connecting micro-fluidics to electron microscopy

Kemmerling, Simon, Ziegler, J., Schweighauser, G., Arnold, S., Giss, D., Müller, S., Ringler, P., Goldie, K., Goedecke, N., Hierlemann, A., Stahlberg, H., Engel, A., Braun, T.

J Struct Biol 177(1), 128-134 (2012)

Dynamo: a flexible, user-friendly development tool for subtomogram averaging of cryo-EM data in high-performance computing environments

Castano-Diez, D., Kudryashev, M., Arheit, M., Stahlberg, H.

J Struct Biol 178(2), 139-51 (2012)

Ionic liquids as matrices in microfluidic sample deposition for high-mass matrix- assisted laser desorption/ionization mass spectrometry

Weidmann, S., Kemmerling, S., Madler, S., Stahlberg, H., Braun, T., Zenobi, R.

Eur J Mass Spectrom (Chichester, Eng) 18(3), 279-86 (2012)

Limiting factors in single particle cryo electron tomography

Kudryashev, M., Castano-Diez, D., Stahlberg, H.

Comput Struct Biotechnol J 1, e201207002 (2012)

Mus81-Mms4 functions as a single heterodimer to cleave nicked intermediates in recombinational DNA repair

Schwartz, E. K., Wright, W. D., Ehmsen, K. T., Evans, J. E., Stahlberg, H., Heyer, W. D.

Mol Cell Biol 32(15), 3065-80 (2012)


Oxidative doping renders graphene hydrophilic, facilitating its use as a support in biological TEM

Pantelic, R., Suk, J. W., Hao, Y., Ruoff, R. S., Stahlberg, H.

Nano Lett 11(10), 4319-23 (2011)

Polymer-based cell-free expression of ligand-binding family B G-protein coupled receptors without detergents

Klammt, C., Perrin, M. H., Maslennikov, I., Renault, L., Krupa, M., Kwiatkowski, W., Stahlberg, H., Vale, W., Choe, S.

Protein Sci 20(6), 1030-41 (2011)

Rad51 paralogues Rad55-Rad57 balance the antirecombinase Srs2 in Rad51 filament formation

Liu, J., Renault, L., Veaute, X., Fabre, F., Stahlberg, H., Heyer, W. D.

Nature 479(7372), 245-8 (2011)

Automatic recovery of missing amplitudes and phases in tilt-limited electron crystallography of two-dimensional crystals

Gipson, B., Masiel, D. J., Browning, N. D., Spence, J., Mitsuoka, K., Stahlberg, H.

Phys Rev E Stat Nonlin Soft Matter Phys 84(1 Pt 1), 11916 (2011)

Graphene: Substrate preparation and introduction

Pantelic, R., Suk, J. W., Magnuson, C. W., Meyer, J. C., Wachsmuth, P., Kaiser, U., Ruoff, R. S., Stahlberg, H.

J Struct Biol 174(1), 234-8 (2011)

Interaction of complexes I, III, and IV within the bovine respirasome by single particle cryo electron tomography

Dudkina, N. V., Kudryashev, M., Stahlberg, H., Boekema, E. J.

Proc Natl Acad Sci U S A 108(37), 15196-200 (2011)


3D reconstruction from 2D crystal image and diffraction data

Schenk, A. D., Castano-Diez, D., Gipson, B., Arheit, M., Zeng, X., Stahlberg, H.

Methods Enzymol 482, 101-29 (2010)

Preparation of 2D crystals of membrane proteins for high-resolution electron crystallography data collection

Abeyrathne, P., Chami, M., Pantelic, R., Goldie, K., Stahlberg, H.

Method Enzymol 481, 25-43 (2010)

High-resolution low-dose scanning transmission electron microscopy

Buban, J. P., Ramasse, Q., Gipson, B., Browning, N. D., Stahlberg, H.

J Electron Microsc (Tokyo) 59(2), 103-12 (2010)


Structural variability of edge dislocations in a SrTiO3 low-angle [001] tilt grain boundary

Buban, J.P., Chi, M., Masiel, D.J., Bradley, J.P., Jiang, B., Stahlberg, H., Browning, N.D.

J Mater Res 24, 2191-2199 (2009)

2007 annual progress report synopsis of the Center for Structures of Membrane Proteins

Stroud, R. M., Choe, S., Holton, J., Kaback, H. R., Kwiatkowski, W., Minor, D. L., Riek, R., Sali, A., Stahlberg, H., Harries, W.

J Struct Funct Genomics 10(2), 193-208 (2009)

Coassembly of Mgm1 isoforms requires cardiolipin and mediates mitochondrial inner membrane fusion

DeVay, R. M., Dominguez-Ramirez, L., Lackner, L. L., Hoppins, S., Stahlberg, H., Nunnari, J.

J Cell Biol 186(6), 793-803 (2009)

Crystal structures of Limulus SAP-like pentraxin reveal two molecular aggregations

Shrive, A. K., Burns, I., Chou, H. T., Stahlberg, H., Armstrong, P. B., Greenhough, T. J.

J Mol Biol 386(5), 1240-54 (2009)

Membrane activity of a C-reactive protein

Harrington, J. M., Chou, H. T., Gutsmann, T., Gelhaus, C., Stahlberg, H., Leippe, M., Armstrong, P. B.

FEBS Lett 583(6), 1001-5 (2009)


Structure determination using electron crystallography

Evans, J.E., Renault, L., Stahlberg, H.

In: 3D-Electron Microscopy in Life Sciences (a Textbook on DVD). Ed. A. Verkleij, E.V. Orlova, and A. Leis. First edition. 3DEM NETWORK of EXCELLENCE (European Union) , (2008)

2dx - Automated 3D structure reconstruction from 2D crystal data

Gipson, B., Zeng, X., Stahlberg, H.

Microscopy and Microanalysis 14(Supp 2), 1290-1291 (2008)

Biological scanning transmission electron microscopy

Müller, S., Engel, A

In: 3D-Electron Microscopy in Life Sciences (a Textbook on DVD). Ed. A. Verkleij, E.V. Orlova, and A. Leis. First edition. 3DEM NETWORK of EXCELLENCE (European Union) , (2008)

Bridging across length scales: multi-scale ordering of supported lipid bilayers via lipoprotein self-assembly and surface patterning

Vinchurkar, M. S., Bricarello, D. A., Lagerstedt, J. O., Buban, J. P., Stahlberg, H., Oda, M. N., Voss, J. C., Parikh, A. N.

J Am Chem Soc 130(33), 11164-9 (2008)

The fold of alpha-synuclein fibrils

Vilar, M., Chou, H. T., Luhrs, T., Maji, S. K., Riek-Loher, D., Verel, R., Manning, G., Stahlberg, H., Riek, R.

Proc Natl Acad Sci U S A 105(25), 8637-42 (2008)

Low-dose aberration corrected cryo-electron microscopy of organic specimens

Evans, J. E., Hetherington, C., Kirkland, A., Chang, L. Y., Stahlberg, H., Browning, N.

Ultramicroscopy 108(12), 1636-44 (2008)

Membrane pore formation by pentraxin proteins from Limulus, the American horseshoe crab

Harrington, J. M., Chou, H. T., Gutsmann, T., Gelhaus, C., Stahlberg, H., Leippe, M., Armstrong, P. B.

Biochem J 413(2), 305-13 (2008)

Molecular electron microscopy: state of the art and current challenges

Stahlberg, H., Walz, T.

ACS Chem Biol 3(5), 268-81 (2008)


2dx_merge: data management and merging for 2D crystal images

Gipson, B., Zeng, X., Stahlberg, H.

J. Struct. Biol. 160(3), 375-384 (2007)

Editorial: Spotlight on Electron Crystallography

Hankamer, B., Glaeser, B., Stahlberg, H.

J Struct Biol 160(3), 263-264 (2007)

Three-dimensional electron microscopy of macromolecular assemblies (J. Frank), Book Review

Renault, L., Stahlberg, H.

Scanning 29(1), 37 (2007)

Oocyte CD9 is enriched on the microvillar membrane and required for normal microvillar shape and distribution

Runge, K. E., Evans, J. E., He, Z. Y., Gupta, S., McDonald, K. L., Stahlberg, H., Primakoff, P., Myles, D. G.

Dev Biol 304(1), 317-25 (2007)

2dx – User-friendly image processing for 2D crystals

Gipson, B., Zeng, X., Zhang, Z. Y., Stahlberg, H.

J Struct Biol 157(1), 64-72 (2007)

A maximum likelihood approach to two-dimensional crystals

Zeng, X., Stahlberg, H., Grigorieff, N.

J Struct Biol 160(3), 362-74 (2007)

Automatic lattice determination for two-dimensional crystal images

Zeng, X., Gipson, B., Zheng, Z. Y., Renault, L., Stahlberg, H.

J Struct Biol 160(3), 353-61 (2007)

Structural and kinetic studies of induced fit in xylulose kinase from Escherichia coli

Di Luccio, E., Petschacher, B., Voegtli, J., Chou, H. T., Stahlberg, H., Nidetzky, B., Wilson, D. K.

J Mol Biol 365(3), 783-98 (2007)

Electron crystallography of membrane proteins

Chou, H. T., Evans, J. E., Stahlberg, H.

Methods Mol Biol 369, 331-43 (2007)

The structure of the prokaryotic cyclic nucleotide-modulated potassium channel MloK1 at 16 A resolution

Chiu, P. L., Pagel, M. D., Evans, J., Chou, H. T., Zeng, X., Gipson, B., Stahlberg, H., Nimigean, C. M.

Structure 15(9), 1053-64 (2007)


Avoiding charge induced drift in vitrified biological specimens through scanning transmission electron microscopy.

Nicotra, G., Chou, H.-T., Stahlberg, H., Browning, N.D.

Microscopy and Microanalysis 12(Supp. 02), 246-247 (2006)

Cryo-electron microscopy analysis of a 105 kDa protein particle: the xylulose kinase from E. coli

Chou, H.-T., di Luccio, E., Wilson, D., Stahlberg, H.

Microscopy and Microanalysis 12(Supp 2), 408-409 (2006)

A homotetrameric kinesin-5, KLP61F, bundles microtubules and antagonizes Ncd in motility assays

Tao, L., Mogilner, A., Civelekoglu-Scholey, G., Wollman, R., Evans, J., Stahlberg, H., Scholey, J. M.

Curr Biol 16(23), 2293-302 (2006)

Double hexameric ring assembly of the type III protein translocase ATPase HrcN

Müller, S., Pozidis, C., Stone, R., Meesters, C., Chami, M., Engel, A., Economou, A., Stahlberg, H.

Mol Microbiol 61(1), 119-25 (2006)

Functional modulation of IFT kinesins extends the sensory repertoire of ciliated neurons in Caenorhabditis elegans

Evans, J. E., Snow, J. J., Gunnarson, A. L., Ou, G., Stahlberg, H., McDonald, K. L., Scholey, J. M.

J Cell Biol 172(5), 663-9 (2006)

Milestones in electron crystallography

Renault, L., Chou, H. T., Chiu, P. L., Hill, R. M., Zeng, X., Gipson, B., Zhang, Z. Y., Cheng, A., Unger, V., Stahlberg, H.

J Comput Aided Mol Des 20(42193), 519-27 (2006)

Applications of Atomic Scale Scanning Transmission Electron Microscopy

Browning, N.D., Erni, R., Mitterbauer, C.J., Fu, L., Chi, M., Mehraeen, S., Herrera, M., Chou, H.-T., Stahlberg, H., Ramasse, Q.M., Ziegler, A., Nicotra, G., Arslan, I., Idrobo, J.-C., Stach, E.A., Bleiloch, A.

Microscopy and Microanalysis 12(S02), 134-135 (2006)


Testing 3-D Reconstruction Methods for Electron Tomography

Mehraeen, S., Stahlberg, H., Evans, J. E., Meesters, C., Arslan, I., Midgley, P.A., Browning, N. D.

Microscopy and Microanalysis 11(S02), 336-337 (2005)

The 4.5 Å structure of human AQP2

Schenk, A. D., Werten, P. J., Scheuring, S., de Groot, B. L., Müller, S., Stahlberg, H., Philippsen, A., Engel, A.

J Mol Biol 350(2), 278-89 (2005)


Oligomeric structure of the Bacillus subtilise cell division protein DivIVA determined by transmission electron microscopy

Stahlberg, H., Kutejova, E., Muchova, K., Gregorini, M., Lustig, A., Müller, S., Olivieri, V., Engel, A., Wilkinson, A. J., Barak, I.

Mol Microbiol 52(5), 1281-90 (2004)


Type III protein translocase: HrcN is a peripheral ATPase that is activated by oligomerization

Pozidis, C., Chalkiadaki, A., Gomez-Serrano, A., Stahlberg, H., Brown, I., Tampakaki, A. P., Lustig, A., Sianidis, G., Politou, A. S., Engel, A., Panopoulos, N. J., Mansfield, J., Pugsley, A. P., Karamanou, S., Economou, A.

J Biol Chem 278(28), 25816-24 (2003)

IPLT: An image processing library and toolkit for the electron microscopy community

Philippsen, A., Schenk, A. D., Stahlberg, H., Engel, A.

J Struct Biol 144(42006), 42106 (2003)


Progress in the analysis of membrane protein structure and function

Werten, P. J., Remigy, H. W., de Groot, B. L., Fotiadis, D., Philippsen, A., Stahlberg, H., Grubmuller, H., Engel, A.

FEBS Lett 529(1), 65-72 (2002)

Aquaglyceroporins: channel proteins with a conserved core, multiple functions, and variable surfaces

Engel, A., Stahlberg, H.

Int Rev Cytol 215, 75-104 (2002)

Sampling the conformational space of membrane protein surfaces with the AFM

Scheuring, S., Muller, D. J., Stahlberg, H., Engel, H. A., Engel, A.

Eur Biophys J 31(3), 172-8 (2002)

Assessing the structure of membrane proteins: combining different methods gives the full picture

Stahlberg, H., Engel, A., Philippsen, A.

Biochem Cell Biol 80(5), 563-8 (2002)

Charting and unzipping the surface layer of Corynebacterium glutamicum with the atomic force microscope

Scheuring, S., Stahlberg, H., Chami, M., Houssin, C., Rigaud, J. L., Engel, A.

Mol Microbiol 44(3), 675-84 (2002)


The aquaporin superfamily: structure and function

Stahlberg, H., Heymann, B., Mitsuoka, K., Fuyijoshi, Y., Engel, A.

Current Topics in Membranes 51, 39-119 (2001)

ATP synthase: constrained stoichiometry of the transmembrane rotor

Muller, D. J., Dencher, N. A., Meier, T., Dimroth, P., Suda, K., Stahlberg, H., Engel, A., Seelert, H., Matthey, U.

FEBS Lett 504(3), 219-22 (2001)

Bacterial Na(+)-ATP synthase has an undecameric rotor

Stahlberg, H., Muller, D. J., Suda, K., Fotiadis, D., Engel, A., Meier, T., Matthey, U., Dimroth, P.

EMBO Rep 2(3), 229-33 (2001)

Two-dimensional crystals: a powerful approach to assess structure, function and dynamics of membrane proteins

Stahlberg, H., Fotiadis, D., Scheuring, S., Remigy, H., Braun, T., Mitsuoka, K., Fujiyoshi, Y., Engel, A.

FEBS Lett 504(3), 166-72 (2001)

Electron Cryomicroscopy

Dubochet, J., Stahlberg, H.

eLS - Enceclopedia of Life Sciences (online library), (2001)


The aquaporin sidedness revisited

Scheuring, S., Tittmann, P., Stahlberg, H., Ringler, P., Borgnia, M., Agre, P., Gross, H., Engel, A.

J. Mol. Biol. 299(5), 1271-1278 (2000)

GlpF: A structural variant of the aquaporin tetramer

Braun, T., Philippsen, A., Wirtz, S., Borgnia, J., Agre, P., Kühlbrandt, W., Engel, A., Stahlberg, H.

In `Molecular biology and physiology of water and solute transport`, Hohmann & S. Nielsen (Eds.) Kluwer Academic, New York. ISBN 0-306-46501-9 , 13-22 (2000)

Proton-powered turbine of a plant motor

Seelert, H., Poetsch, A., Dencher, N. A., Engel, A., Stahlberg, H., Muller, D. J.

Nature 405(6785), 418-9 (2000)

Surface tongue-and-groove contours on lens MIP facilitate cell-to-cell adherence

Fotiadis, D., Hasler, L., Muller, D. J., Stahlberg, H., Kistler, J., Engel, A.

J Mol Biol 300(4), 779-89 (2000)

The 3.7 Å projection map of the glycerol facilitator GlpF: a variant of the aquaporin tetramer

Braun, T., Philippsen, A., Wirtz, S., Borgnia, M. J., Agre, P., Kühlbrandt, W., Engel, A., Stahlberg, H.

EMBO Rep 1(2), 183-9 (2000)

The 6.9-Å structure of GlpF: a basis for homology modeling of the glycerol channel from Escherichia coli

Stahlberg, H., Braun, T., de Groot, B., Philippsen, A., Borgnia, M. J., Agre, P., Kühlbrandt, W., Engel, A.

J Struct Biol 132(2), 133-41 (2000)

Domain structure of secretin PulD revealed by limited proteolysis and electron microscopy

Nouwen, N., Stahlberg, H., Pugsley, A. P., Engel, A.

EMBO J 19(10), 2229-36 (2000)


The reaction centre from green sulphur bacteria Chlorobium tedium: a structural analysis by scanning transmission electron microscopy

Remigy, H. W., Stahlberg, H., Fotiadis, D., Müller, S., Wolpensinger, B., Engel, A., Hauska, G., Tsiotis, G.

J Mol Biol 290(4), 851-858 (1999)

Structural investigation of the major intrinsic protein of lens fiber cell membranes

Hasler, L., Fotiadis, D., Müller, D.J., Kistler, J., Engel, A., Stahlberg, H.

Biophysical Journal 76(1), A136 (1999)

Structure of the water channel AqpZ from Escherichia coli revealed by electron crystallography

Ringler, P., Borgnia, M. J., Stahlberg, H., Maloney, P. C., Agre, P., Engel, A.

J Mol Biol 291(5), 1181-90 (1999)

High resolution AFM topographs of the Escherichia coli water channel aquaporin Z

Scheuring, S., Ringler, P., Borgnia, M., Stahlberg, H., Muller, D. J., Agre, P., Engel, A.

EMBO J 18(18), 4981-7 (1999)

Mitochondrial Lon of Saccharomyces cerevisiae is a ring-shaped protease with seven flexible subunits

Stahlberg, H., Kutejova, E., Suda, K., Wolpensinger, B., Lustig, A., Schatz, G., Engel, A., Suzuki, C. K.

Proc Natl Acad Sci U S A 96(12), 6787-90 (1999)


The reaction centre of the photounit of Rhodospirillum rubrum is anchored to the light-harvesting complex with four-fold rotational disorder

Stahlberg, H., Dubochet, J., Vogel, H., Ghosh, R.

Photosynthesis Research 55, 363-368 (1998)

Are the light-harvesting I complexes from Rhodospirillum rubrum arranged around the reaction centre in a square geometry?

Stahlberg, H., Dubochet, J., Vogel, H., Ghosh, R.

J Mol Biol 282(4), 819-31 (1998)

Friction anisotropy and asymmetry of a compliant monolayer induced by a small molecular tilt

Liley, M., Gourdon, D., Stamou, D., Meseth, U., Fischer, T. M., Lautz, C., Stahlberg, H., Vogel, H., Burnham, N. A., Duschl, C.

Science 280(5361), 273-5 (1998)


Chloroplast F0F1 ATP synthase imaged by atomic force microscopy

Neff, D., Tripathi, S., Middendorf, K., Stahlberg, H., Butt, H. J., Bamberg, E., Dencher, N. A.

J Struct Biol 119(2), 139-48 (1997)


Sulphur-bearing lipids for the covalent attachment of supported lipid bilayers to gold surfaces: a detailed characterisation and analysis

Duschl, C., Liley, M., Lang, J, Ghandi, A., Zakeeruddin, S.M., Stahlberg, H., Dubochet, J., Nemetz, A., Knoll, W., Vogel, H.

Materials Science & Engineering C 4, 7-18 (1996)


2D thiolipid crystals examined by dark field transmission electron microscopy

Stahlberg, H., Duschl, C., Liley, M., Vogel, H., Dubochet, J.

Electron Microscopy 3A, 971-972 (1994)